Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84493.1 | csrA | TREPR_1918 | TREPR_1922 | Hypothetical protein; Identified by glimmer; putative. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.621 |
| AEF84493.1 | flgK | TREPR_1918 | TREPR_1919 | Hypothetical protein; Identified by glimmer; putative. | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | 0.830 |
| AEF84493.1 | flgL | TREPR_1918 | TREPR_1920 | Hypothetical protein; Identified by glimmer; putative. | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | 0.690 |
| AEF84493.1 | fliW | TREPR_1918 | TREPR_1921 | Hypothetical protein; Identified by glimmer; putative. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.613 |
| csrA | AEF84493.1 | TREPR_1922 | TREPR_1918 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Hypothetical protein; Identified by glimmer; putative. | 0.621 |
| csrA | flgK | TREPR_1922 | TREPR_1919 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | 0.846 |
| csrA | flgL | TREPR_1922 | TREPR_1920 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | 0.851 |
| csrA | fliW | TREPR_1922 | TREPR_1921 | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.998 |
| flgK | AEF84493.1 | TREPR_1919 | TREPR_1918 | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | Hypothetical protein; Identified by glimmer; putative. | 0.830 |
| flgK | csrA | TREPR_1919 | TREPR_1922 | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.846 |
| flgK | flgL | TREPR_1919 | TREPR_1920 | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | 0.987 |
| flgK | fliW | TREPR_1919 | TREPR_1921 | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.929 |
| flgL | AEF84493.1 | TREPR_1920 | TREPR_1918 | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | Hypothetical protein; Identified by glimmer; putative. | 0.690 |
| flgL | csrA | TREPR_1920 | TREPR_1922 | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.851 |
| flgL | flgK | TREPR_1920 | TREPR_1919 | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | 0.987 |
| flgL | fliW | TREPR_1920 | TREPR_1921 | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.970 |
| fliW | AEF84493.1 | TREPR_1921 | TREPR_1918 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Hypothetical protein; Identified by glimmer; putative. | 0.613 |
| fliW | csrA | TREPR_1921 | TREPR_1922 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.998 |
| fliW | flgK | TREPR_1921 | TREPR_1919 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family. | 0.929 |
| fliW | flgL | TREPR_1921 | TREPR_1920 | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | Flagellar hook-associated protein 3; Identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550. | 0.970 |