Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF84571.1Hypothetical protein; Identified by glimmer; putative. (360 aa)    
Predicted Functional Partners:
AEF86531.1
HAD-superfamily hydrolase, subfamily IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
       0.773
AEF85135.1
Hydrolase; Identified by match to protein family HMM PF00702.
       0.773
AEF85314.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.687
AEF83603.1
Conserved hypothetical ABC transporter periplasmic solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.588
AEF85263.1
Putative ribokinase; Identified by match to protein family HMM PF00294.
 
     0.507
AEF86068.1
Identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM TIGR01977.
    
   0.498
AEF84194.1
Probable cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.498
AEF84772.1
Tobe domain family; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
       0.476
AEF84674.1
OmpA; Identified by match to protein family HMM PF00691.
  
  
 0.470
AEF86946.1
ABC transporter permease protein; Identified by match to protein family HMM PF00528.
       0.418
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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