STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85379.1Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (326 aa)    
Predicted Functional Partners:
AEF86072.1
Oligopeptide transport system permease protein OppC; Identified by match to protein family HMM PF00528.
 
  0.942
AEF84875.1
Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.
 
 
 0.926
AEF84652.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
    0.917
AEF86555.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
  
 
0.907
AEF86856.1
Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
  
 
0.906
AEF86446.1
Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.
 
 
 0.884
AEF86236.1
Bacterial extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
 
 0.876
AEF86332.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
   
0.865
AEF84979.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
    0.856
AEF85587.1
Putative oligopeptide ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00496.
  
 
  0.827
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.