Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF84652.1Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528. (284 aa)    
Predicted Functional Partners:
AEF84979.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
   0.968
AEF85379.1
Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
   0.929
AEF86332.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
   0.889
AEF84069.1
Oligopeptide ABC transporter, oligopeptide- binding protein; Identified by match to protein family HMM PF00496.
 
   0.887
AEF84203.1
Oligopeptide transport system permease protein OppB; Identified by match to protein family HMM PF00528.
 
   0.873
AEF85934.1
Probable peptide ABC transporter permease protein y4tP; Identified by match to protein family HMM PF00528.
 
   0.872
AEF83901.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
 
   0.872
AEF86901.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   0.872
AEF85260.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
   0.870
AEF85384.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
  
   0.870
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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