STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85320.1Conserved hypothetical protein. (184 aa)    
Predicted Functional Partners:
AEF86896.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
AEF83766.1
Putative phage capsid family; Identified by match to protein family HMM PF05065.
  
     0.770
AEF83892.1
Caudovirus prohead protease; Identified by match to protein family HMM PF04586.
  
     0.770
AEF86331.1
Putative caudovirus prohead protease; Identified by match to protein family HMM PF04586.
  
     0.769
AEF86364.1
Putative phage capsid family; Identified by match to protein family HMM PF05065.
  
     0.768
AEF84883.1
Conserved hypothetical protein.
  
     0.744
AEF85181.1
Conserved hypothetical protein.
  
     0.741
AEF85534.1
Conserved hypothetical protein.
  
     0.738
AEF84389.1
Conserved hypothetical protein.
  
     0.737
AEF86423.1
Identified by match to protein family HMM PF01909.
  
     0.735
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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