Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF83717.1 | AEF83921.1 | TREPR_3238 | TREPR_0764 | Fnip. | Identified by match to protein family HMM PF00076. | 0.783 |
AEF83717.1 | AEF84427.1 | TREPR_3238 | TREPR_2253 | Fnip. | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 0.922 |
AEF83717.1 | AEF84706.1 | TREPR_3238 | TREPR_2820 | Fnip. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.747 |
AEF83717.1 | AEF84968.1 | TREPR_3238 | TREPR_0450 | Fnip. | Peptidyl-prolyl cis-trans isomerase; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254. | 0.898 |
AEF83717.1 | AEF86947.1 | TREPR_3238 | TREPR_2927 | Fnip. | Putative ankyrin; Identified by match to protein family HMM PF00023. | 0.778 |
AEF83921.1 | AEF83717.1 | TREPR_0764 | TREPR_3238 | Identified by match to protein family HMM PF00076. | Fnip. | 0.783 |
AEF83921.1 | AEF84427.1 | TREPR_0764 | TREPR_2253 | Identified by match to protein family HMM PF00076. | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 0.788 |
AEF83921.1 | AEF84968.1 | TREPR_0764 | TREPR_0450 | Identified by match to protein family HMM PF00076. | Peptidyl-prolyl cis-trans isomerase; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254. | 0.523 |
AEF84427.1 | AEF83717.1 | TREPR_2253 | TREPR_3238 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Fnip. | 0.922 |
AEF84427.1 | AEF83921.1 | TREPR_2253 | TREPR_0764 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Identified by match to protein family HMM PF00076. | 0.788 |
AEF84427.1 | AEF84706.1 | TREPR_2253 | TREPR_2820 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | 0.762 |
AEF84427.1 | AEF84968.1 | TREPR_2253 | TREPR_0450 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Peptidyl-prolyl cis-trans isomerase; Identified by match to protein family HMM PF00160; match to protein family HMM PF00254. | 0.956 |
AEF84427.1 | AEF86939.1 | TREPR_2253 | TREPR_0145 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 3'-5' exonuclease domain protein; Identified by match to protein family HMM PF01612. | 0.954 |
AEF84427.1 | AEF86947.1 | TREPR_2253 | TREPR_2927 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Putative ankyrin; Identified by match to protein family HMM PF00023. | 0.763 |
AEF84427.1 | cmk | TREPR_2253 | TREPR_2339 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.892 |
AEF84427.1 | rpsD | TREPR_2253 | TREPR_1500 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.917 |
AEF84427.1 | rpsE | TREPR_2253 | TREPR_1494 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.784 |
AEF84427.1 | rpsK | TREPR_2253 | TREPR_1499 | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.826 |
AEF84706.1 | AEF83717.1 | TREPR_2820 | TREPR_3238 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Fnip. | 0.747 |
AEF84706.1 | AEF84427.1 | TREPR_2820 | TREPR_2253 | Ankyrin repeat protein; Identified by match to protein family HMM PF00023. | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 (Helicase JA1); Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717. | 0.762 |
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