STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF83809.1Hypothetical protein; Identified by glimmer; putative. (257 aa)    
Predicted Functional Partners:
AEF84208.1
Identified by match to protein family HMM PF07556.
 
     0.947
amt
Ammonium transporter; Identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836.
  
 
 0.930
AEF86112.1
Identified by match to protein family HMM PF07556.
 
     0.779
argA
Amino-acid N-acetyltransferase; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR01890; Belongs to the acetyltransferase family.
   
 
 0.709
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.692
gltB
Glutamate synthase, large subunit; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
  
 0.557
AEF84719.1
Nitrogen fixation protein NifH/NifE; Identified by match to protein family HMM PF00142; match to protein family HMM PF00148; Belongs to the NifH/BchL/ChlL family.
  
 
 0.540
rpoD
RNA polymerase sigma factor RpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.529
AEF85186.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03692.
       0.511
AEF85922.1
Metallo-beta-lactamase family protein.
       0.511
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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