Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84949.1 | dnaG | TREPR_2469 | TREPR_2320 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.734 |
| AEF85186.1 | AEF85922.1 | TREPR_2317 | TREPR_2318 | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | Metallo-beta-lactamase family protein. | 0.812 |
| AEF85186.1 | dnaG | TREPR_2317 | TREPR_2320 | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.819 |
| AEF85186.1 | mltG | TREPR_2317 | TREPR_2319 | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.816 |
| AEF85186.1 | rpoD | TREPR_2317 | TREPR_2321 | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | RNA polymerase sigma factor RpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.836 |
| AEF85754.1 | dnaG | TREPR_3818 | TREPR_2320 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.754 |
| AEF85922.1 | AEF85186.1 | TREPR_2318 | TREPR_2317 | Metallo-beta-lactamase family protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | 0.812 |
| AEF85922.1 | dnaG | TREPR_2318 | TREPR_2320 | Metallo-beta-lactamase family protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.814 |
| AEF85922.1 | mltG | TREPR_2318 | TREPR_2319 | Metallo-beta-lactamase family protein. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.800 |
| AEF85922.1 | rpoD | TREPR_2318 | TREPR_2321 | Metallo-beta-lactamase family protein. | RNA polymerase sigma factor RpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.792 |
| AEF86489.1 | dnaG | TREPR_1827 | TREPR_2320 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.761 |
| dnaB | dnaG | TREPR_2680 | TREPR_2320 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.951 |
| dnaG | AEF84949.1 | TREPR_2320 | TREPR_2469 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.734 |
| dnaG | AEF85186.1 | TREPR_2320 | TREPR_2317 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Conserved hypothetical protein; Identified by match to protein family HMM PF03692. | 0.819 |
| dnaG | AEF85754.1 | TREPR_2320 | TREPR_3818 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.754 |
| dnaG | AEF85922.1 | TREPR_2320 | TREPR_2318 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Metallo-beta-lactamase family protein. | 0.814 |
| dnaG | AEF86489.1 | TREPR_2320 | TREPR_1827 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.761 |
| dnaG | dnaB | TREPR_2320 | TREPR_2680 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.951 |
| dnaG | mltG | TREPR_2320 | TREPR_2319 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.818 |
| dnaG | rpoD | TREPR_2320 | TREPR_2321 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | RNA polymerase sigma factor RpoD (Sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.937 |
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