Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83796.1 | AEF86991.1 | TREPR_2330 | TREPR_2325 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | 0.783 |
| AEF83796.1 | mrdA | TREPR_2330 | TREPR_2328 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.817 |
| AEF83796.1 | mrdB | TREPR_2330 | TREPR_2329 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.817 |
| AEF83796.1 | mreC | TREPR_2330 | TREPR_2326 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.819 |
| AEF83796.1 | mreD | TREPR_2330 | TREPR_2327 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Rod shape-determining protein MreD; Identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426. | 0.819 |
| AEF85321.1 | AEF86991.1 | TREPR_2209 | TREPR_2325 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | 0.506 |
| AEF85321.1 | mraY | TREPR_2209 | TREPR_2573 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.745 |
| AEF85321.1 | mrdA | TREPR_2209 | TREPR_2328 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.926 |
| AEF85321.1 | mrdB | TREPR_2209 | TREPR_2329 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.936 |
| AEF85321.1 | mreC | TREPR_2209 | TREPR_2326 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.669 |
| AEF85321.1 | murC | TREPR_2209 | TREPR_2414 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.817 |
| AEF85321.1 | murD | TREPR_2209 | TREPR_1066 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.783 |
| AEF85321.1 | murG | TREPR_2209 | TREPR_2221 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.773 |
| AEF86991.1 | AEF83796.1 | TREPR_2325 | TREPR_2330 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.783 |
| AEF86991.1 | AEF85321.1 | TREPR_2325 | TREPR_2209 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.506 |
| AEF86991.1 | mrdA | TREPR_2325 | TREPR_2328 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.963 |
| AEF86991.1 | mrdB | TREPR_2325 | TREPR_2329 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.958 |
| AEF86991.1 | mreC | TREPR_2325 | TREPR_2326 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.996 |
| AEF86991.1 | mreD | TREPR_2325 | TREPR_2327 | Rod shape-determining protein MreB; Identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904. | Rod shape-determining protein MreD; Identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426. | 0.891 |
| mraY | AEF85321.1 | TREPR_2573 | TREPR_2209 | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.745 |
page 1 of 5