STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86640.1Putative TPR domain protein; Identified by match to protein family HMM PF00515. (229 aa)    
Predicted Functional Partners:
cmk
Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717.
  
  
 0.824
nifA_2
Nif-specific regulatory protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728.
       0.819
AEF84666.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
AEF85891.1
Putative lipoprotein.
       0.773
AEF86665.1
RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family.
       0.751
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.751
AEF85112.1
ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.751
AEF85963.1
Putative trep.
  
  
 0.749
AEF87007.1
Cell surface protein.
  
  
 0.631
AEF86174.1
D-methionine transport system permease protein MetI; Identified by match to protein family HMM PF00528.
       0.625
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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