Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84621.1 | AEF84666.1 | TREPR_2331 | TREPR_2335 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | Hypothetical protein; Identified by glimmer; putative. | 0.571 |
| AEF84621.1 | AEF85112.1 | TREPR_2331 | TREPR_2342 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.513 |
| AEF84621.1 | AEF85427.1 | TREPR_2331 | TREPR_2343 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | N-acyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; Belongs to the peptidase M20A family. | 0.633 |
| AEF84621.1 | AEF85891.1 | TREPR_2331 | TREPR_2336 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | Putative lipoprotein. | 0.571 |
| AEF84621.1 | AEF86640.1 | TREPR_2331 | TREPR_2337 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | Putative TPR domain protein; Identified by match to protein family HMM PF00515. | 0.571 |
| AEF84621.1 | AEF86665.1 | TREPR_2331 | TREPR_2340 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | 0.513 |
| AEF84621.1 | cmk | TREPR_2331 | TREPR_2339 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.527 |
| AEF84621.1 | scpB | TREPR_2331 | TREPR_2341 | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.513 |
| AEF84666.1 | AEF84621.1 | TREPR_2335 | TREPR_2331 | Hypothetical protein; Identified by glimmer; putative. | Thermostable carboxypeptidase 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. | 0.571 |
| AEF84666.1 | AEF85112.1 | TREPR_2335 | TREPR_2342 | Hypothetical protein; Identified by glimmer; putative. | ScpA/B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.689 |
| AEF84666.1 | AEF85427.1 | TREPR_2335 | TREPR_2343 | Hypothetical protein; Identified by glimmer; putative. | N-acyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; Belongs to the peptidase M20A family. | 0.488 |
| AEF84666.1 | AEF85891.1 | TREPR_2335 | TREPR_2336 | Hypothetical protein; Identified by glimmer; putative. | Putative lipoprotein. | 0.773 |
| AEF84666.1 | AEF86640.1 | TREPR_2335 | TREPR_2337 | Hypothetical protein; Identified by glimmer; putative. | Putative TPR domain protein; Identified by match to protein family HMM PF00515. | 0.773 |
| AEF84666.1 | AEF86665.1 | TREPR_2335 | TREPR_2340 | Hypothetical protein; Identified by glimmer; putative. | RNA pseudouridylate synthase family protein; Identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | 0.689 |
| AEF84666.1 | cmk | TREPR_2335 | TREPR_2339 | Hypothetical protein; Identified by glimmer; putative. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.689 |
| AEF84666.1 | recA | TREPR_2335 | TREPR_2344 | Hypothetical protein; Identified by glimmer; putative. | Protein RecA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.471 |
| AEF84666.1 | scpB | TREPR_2335 | TREPR_2341 | Hypothetical protein; Identified by glimmer; putative. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.689 |
| AEF84808.1 | AEF85427.1 | TREPR_2345 | TREPR_2343 | Putative lipoprotein. | N-acyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; Belongs to the peptidase M20A family. | 0.525 |
| AEF84808.1 | cmk | TREPR_2345 | TREPR_2339 | Putative lipoprotein. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.410 |
| AEF84808.1 | recA | TREPR_2345 | TREPR_2344 | Putative lipoprotein. | Protein RecA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.545 |
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