STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84758.1Identified by match to protein family HMM PF01041; UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase; UDP-Ara4O aminotransferase; Polymyxin resistanceprotein PmrH; Belongs to the DegT/DnrJ/EryC1 family. (416 aa)    
Predicted Functional Partners:
AEF84828.1
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
 
  
 0.967
AEF86428.1
Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025.
  
 0.876
AEF85886.1
Putative aldehyde oxidase and xanthine dehydrogenase family protein; Identified by match to protein family HMM PF01315; match to protein family HMM PF02738.
       0.778
AEF86636.1
Isoquinoline 1-oxidoreductase subunit alpha; Identified by match to protein family HMM PF00111; match to protein family HMM PF01799.
       0.777
AEF86342.1
Transcription antitermination protein, NusG family; Identified by match to protein family HMM PF02357.
       0.774
AEF86529.1
Identified by match to protein family HMM PF03102; match to protein family HMM PF08666.
 
  
 0.739
AEF84111.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.696
AEF85364.1
Spore coat polysaccharide biosynthesis protein SpsF; Identified by match to protein family HMM PF02348.
 
  
 0.654
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.640
AEF86024.1
Polysaccharide biosynthesis protein CapD; Identified by match to protein family HMM PF02719.
 
  
 0.612
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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