STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF86089.1Transposase, Mutator family; Identified by match to protein family HMM PF00872. (404 aa)    
Predicted Functional Partners:
AEF86394.1
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.762
AEF84094.1
Hypothetical protein; Identified by glimmer; putative.
       0.746
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.735
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.735
AEF83914.1
Glycosyltransferase, family 2; Identified by match to protein family HMM PF00535.
       0.735
AEF86330.1
UDP-glucuronic acid decarboxylase 1 (UDP-glucuronatedecarboxylase 1) (UGD) (UXS-1); Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.
       0.701
AEF84916.1
Glycosyltransferase, family 1; Identified by match to protein family HMM PF00534.
       0.664
AEF86709.1
Hypothetical protein; Identified by glimmer; putative.
       0.664
AEF85968.1
Glycosyltransferase, family 1; Identified by match to protein family HMM PF00534.
       0.664
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
    0.629
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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