Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84987.1 | AEF85246.1 | TREPR_3552 | TREPR_1576 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.769 |
| AEF84987.1 | AEF85511.1 | TREPR_3552 | TREPR_2726 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.759 |
| AEF84987.1 | AEF85558.1 | TREPR_3552 | TREPR_1003 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Putative recombination protein O. | 0.771 |
| AEF84987.1 | AEF85661.1 | TREPR_3552 | TREPR_2807 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Phosphoribosyl transferase domain protein. | 0.766 |
| AEF84987.1 | AEF85696.1 | TREPR_3552 | TREPR_2725 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Identified by match to protein family HMM PF02878. | 0.772 |
| AEF84987.1 | AEF86028.1 | TREPR_3552 | TREPR_0667 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Conserved hypothetical protein. | 0.772 |
| AEF84987.1 | AEF87008.1 | TREPR_3552 | TREPR_2407 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Hypothetical protein; Identified by glimmer; putative. | 0.710 |
| AEF84987.1 | cmk-2 | TREPR_3552 | TREPR_2412 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Putative cytidylate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR02173. | 0.746 |
| AEF84987.1 | greA | TREPR_3552 | TREPR_1717 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.756 |
| AEF85246.1 | AEF84987.1 | TREPR_1576 | TREPR_3552 | Conserved hypothetical protein. | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | 0.769 |
| AEF85246.1 | AEF85511.1 | TREPR_1576 | TREPR_2726 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.757 |
| AEF85246.1 | AEF85558.1 | TREPR_1576 | TREPR_1003 | Conserved hypothetical protein. | Putative recombination protein O. | 0.771 |
| AEF85246.1 | AEF85661.1 | TREPR_1576 | TREPR_2807 | Conserved hypothetical protein. | Phosphoribosyl transferase domain protein. | 0.769 |
| AEF85246.1 | AEF85696.1 | TREPR_1576 | TREPR_2725 | Conserved hypothetical protein. | Identified by match to protein family HMM PF02878. | 0.772 |
| AEF85246.1 | AEF86028.1 | TREPR_1576 | TREPR_0667 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.771 |
| AEF85246.1 | AEF87008.1 | TREPR_1576 | TREPR_2407 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.687 |
| AEF85246.1 | cmk-2 | TREPR_1576 | TREPR_2412 | Conserved hypothetical protein. | Putative cytidylate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR02173. | 0.726 |
| AEF85246.1 | greA | TREPR_1576 | TREPR_1717 | Conserved hypothetical protein. | Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.742 |
| AEF85357.1 | AEF85696.1 | TREPR_2406 | TREPR_2725 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF02878. | 0.426 |
| AEF85357.1 | AEF87008.1 | TREPR_2406 | TREPR_2407 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.728 |
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