Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83558.1 | AEF84784.1 | TREPR_3726 | TREPR_0192 | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | Putative ClpX, ATPase regulatory subunit; Identified by match to protein family HMM PF02563. | 0.900 |
| AEF83558.1 | AEF85028.1 | TREPR_3726 | TREPR_0356 | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | Hypothetical protein; Identified by glimmer; putative. | 0.900 |
| AEF83558.1 | AEF86428.1 | TREPR_3726 | TREPR_2408 | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.850 |
| AEF83894.1 | AEF86428.1 | TREPR_0004 | TREPR_2408 | Putative polysaccharide biosynthesis/export domain protein. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.850 |
| AEF84328.1 | AEF86428.1 | TREPR_0366 | TREPR_2408 | Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.850 |
| AEF84758.1 | AEF86428.1 | TREPR_2357 | TREPR_2408 | Identified by match to protein family HMM PF01041; UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase; UDP-Ara4O aminotransferase; Polymyxin resistanceprotein PmrH; Belongs to the DegT/DnrJ/EryC1 family. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.876 |
| AEF84784.1 | AEF83558.1 | TREPR_0192 | TREPR_3726 | Putative ClpX, ATPase regulatory subunit; Identified by match to protein family HMM PF02563. | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | 0.900 |
| AEF84784.1 | AEF85028.1 | TREPR_0192 | TREPR_0356 | Putative ClpX, ATPase regulatory subunit; Identified by match to protein family HMM PF02563. | Hypothetical protein; Identified by glimmer; putative. | 0.900 |
| AEF84784.1 | AEF86428.1 | TREPR_0192 | TREPR_2408 | Putative ClpX, ATPase regulatory subunit; Identified by match to protein family HMM PF02563. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.850 |
| AEF85028.1 | AEF83558.1 | TREPR_0356 | TREPR_3726 | Hypothetical protein; Identified by glimmer; putative. | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | 0.900 |
| AEF85028.1 | AEF84784.1 | TREPR_0356 | TREPR_0192 | Hypothetical protein; Identified by glimmer; putative. | Putative ClpX, ATPase regulatory subunit; Identified by match to protein family HMM PF02563. | 0.900 |
| AEF85028.1 | AEF86428.1 | TREPR_0356 | TREPR_2408 | Hypothetical protein; Identified by glimmer; putative. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.850 |
| AEF85512.1 | AEF85735.1 | TREPR_0201 | TREPR_0338 | Putative membrane protein. | Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | 0.444 |
| AEF85512.1 | AEF86428.1 | TREPR_0201 | TREPR_2408 | Putative membrane protein. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.858 |
| AEF85735.1 | AEF85512.1 | TREPR_0338 | TREPR_0201 | Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | Putative membrane protein. | 0.444 |
| AEF85735.1 | AEF86428.1 | TREPR_0338 | TREPR_2408 | Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | 0.867 |
| AEF86428.1 | AEF83558.1 | TREPR_2408 | TREPR_3726 | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | Putative polysaccharide biosynthesis/export domain protein; Identified by match to protein family HMM PF02563. | 0.850 |
| AEF86428.1 | AEF83894.1 | TREPR_2408 | TREPR_0004 | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | Putative polysaccharide biosynthesis/export domain protein. | 0.850 |
| AEF86428.1 | AEF84328.1 | TREPR_2408 | TREPR_0366 | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563. | 0.850 |
| AEF86428.1 | AEF84758.1 | TREPR_2408 | TREPR_2357 | Undecaprenyl-phosphate galactose phosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025. | Identified by match to protein family HMM PF01041; UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate)aminotransferase; UDP-Ara4O aminotransferase; Polymyxin resistanceprotein PmrH; Belongs to the DegT/DnrJ/EryC1 family. | 0.876 |
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