STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84763.1N-acetylmuramoyl-L-alanine amidase, family 3; Identified by match to protein family HMM PF01520. (409 aa)    
Predicted Functional Partners:
AEF83788.1
Identified by match to protein family HMM PF01071; match to protein family HMM PF02655.
 
     0.839
AEF85746.1
Hypothetical protein; Identified by glimmer; putative.
       0.819
AEF86862.1
Flagellar filament outer layer protein (Sheath protein); Identified by match to protein family HMM PF04620.
       0.639
AEF85117.1
Rare lipoprotein A; Identified by match to protein family HMM PF03330.
 
 
 0.573
rlpA
Lipoprotein, RlpA family; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.543
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479; match to protein family HMM TIGR03303.
 
   
 0.512
AEF84332.1
Identified by match to protein family HMM PF01694.
  
   0.478
AEF85983.1
Identified by match to protein family HMM PF01694.
  
   0.478
AEF84147.1
Penicillin-binding protein 1A; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
 
   
 0.476
AEF85691.1
Conserved hypothetical protein.
  
 
   0.468
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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