Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83758.1 | AEF84949.1 | TREPR_1023 | TREPR_2469 | Transcription factor; Identified by match to protein family HMM PF02559. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.722 |
| AEF83758.1 | AEF85288.1 | TREPR_1023 | TREPR_2532 | Transcription factor; Identified by match to protein family HMM PF02559. | Conserved domain protein. | 0.857 |
| AEF83758.1 | rpoA | TREPR_1023 | TREPR_1501 | Transcription factor; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.877 |
| AEF83758.1 | rpoB | TREPR_1023 | TREPR_0930 | Transcription factor; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.880 |
| AEF83758.1 | rpoC | TREPR_1023 | TREPR_0931 | Transcription factor; Identified by match to protein family HMM PF02559. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.869 |
| AEF84949.1 | AEF83758.1 | TREPR_2469 | TREPR_1023 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcription factor; Identified by match to protein family HMM PF02559. | 0.722 |
| AEF84949.1 | AEF85288.1 | TREPR_2469 | TREPR_2532 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved domain protein. | 0.728 |
| AEF84949.1 | AEF86155.1 | TREPR_2469 | TREPR_2470 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | LysM domain/M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551. | 0.600 |
| AEF84949.1 | dnaG | TREPR_2469 | TREPR_2320 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.734 |
| AEF84949.1 | efp | TREPR_2469 | TREPR_1457 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.702 |
| AEF84949.1 | frr | TREPR_2469 | TREPR_2672 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.559 |
| AEF84949.1 | rplR | TREPR_2469 | TREPR_1493 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.569 |
| AEF84949.1 | rpoA | TREPR_2469 | TREPR_1501 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.775 |
| AEF84949.1 | rpoB | TREPR_2469 | TREPR_0930 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.804 |
| AEF84949.1 | rpoC | TREPR_2469 | TREPR_0931 | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.741 |
| AEF85288.1 | AEF83758.1 | TREPR_2532 | TREPR_1023 | Conserved domain protein. | Transcription factor; Identified by match to protein family HMM PF02559. | 0.857 |
| AEF85288.1 | AEF84949.1 | TREPR_2532 | TREPR_2469 | Conserved domain protein. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.728 |
| AEF85288.1 | efp | TREPR_2532 | TREPR_1457 | Conserved domain protein. | Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.573 |
| AEF85288.1 | rplR | TREPR_2532 | TREPR_1493 | Conserved domain protein. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.939 |
| AEF85288.1 | rpoA | TREPR_2532 | TREPR_1501 | Conserved domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
page 1 of 4