STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (308 aa)    
Predicted Functional Partners:
AEF83851.1
ABC-type multidrug transport system, ATPase component; Identified by match to protein family HMM PF00005.
 
    0.789
AEF86625.1
Hypothetical protein; Identified by glimmer; putative.
       0.757
AEF83884.1
ABC transporter permease protein.
       0.756
AEF85899.1
Hypothetical protein; Identified by glimmer; putative.
       0.718
argS
arginine--tRNA ligase; Identified by match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
  
  
 0.514
AEF85431.1
YheO domain protein; Identified by match to protein family HMM PF08348.
       0.510
AEF86136.1
Phosphoglycolate phosphatase; Identified by match to protein family HMM PF00702.
 
    0.494
AEF84483.1
DHH family protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF02272.
     
 0.460
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
 
 
   0.449
AEF85121.1
Metal dependent phosphohydrolase; Identified by match to protein family HMM PF01966.
  
     0.448
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.