Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83841.1 | AEF85172.1 | TREPR_2567 | TREPR_2568 | Tetratricopeptide repeat protein. | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | 0.803 |
| AEF83841.1 | AEF85212.1 | TREPR_2567 | TREPR_2566 | Tetratricopeptide repeat protein. | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | 0.823 |
| AEF83841.1 | hslU | TREPR_2567 | TREPR_2562 | Tetratricopeptide repeat protein. | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.815 |
| AEF83841.1 | hslV | TREPR_2567 | TREPR_2563 | Tetratricopeptide repeat protein. | ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.815 |
| AEF83841.1 | topA | TREPR_2567 | TREPR_2565 | Tetratricopeptide repeat protein. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.800 |
| AEF83841.1 | xerC | TREPR_2567 | TREPR_2564 | Tetratricopeptide repeat protein. | Site-specific recombinase, phage integrase family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.816 |
| AEF85172.1 | AEF83841.1 | TREPR_2568 | TREPR_2567 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | Tetratricopeptide repeat protein. | 0.803 |
| AEF85172.1 | AEF85212.1 | TREPR_2568 | TREPR_2566 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | 0.855 |
| AEF85172.1 | hslU | TREPR_2568 | TREPR_2562 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.835 |
| AEF85172.1 | hslV | TREPR_2568 | TREPR_2563 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.868 |
| AEF85172.1 | topA | TREPR_2568 | TREPR_2565 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.845 |
| AEF85172.1 | xerC | TREPR_2568 | TREPR_2564 | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | Site-specific recombinase, phage integrase family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.860 |
| AEF85212.1 | AEF83841.1 | TREPR_2566 | TREPR_2567 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Tetratricopeptide repeat protein. | 0.823 |
| AEF85212.1 | AEF85172.1 | TREPR_2566 | TREPR_2568 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Integrase/recombinase XerD; Identified by match to protein family HMM PF00589; match to protein family HMM PF02899; Belongs to the 'phage' integrase family. | 0.855 |
| AEF85212.1 | hslU | TREPR_2566 | TREPR_2562 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.819 |
| AEF85212.1 | hslV | TREPR_2566 | TREPR_2563 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. | 0.838 |
| AEF85212.1 | topA | TREPR_2566 | TREPR_2565 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.932 |
| AEF85212.1 | xerC | TREPR_2566 | TREPR_2564 | Smf protein; Identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732. | Site-specific recombinase, phage integrase family; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.857 |
| groL | groS | TREPR_0596 | TREPR_2759 | Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Chaperonin GroS; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.998 |
| groL | grpE | TREPR_0596 | TREPR_0313 | Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | Co-chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-depend [...] | 0.981 |
page 1 of 4