Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF85288.1 | cmk | TREPR_2532 | TREPR_2339 | Conserved domain protein. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.798 |
| AEF85288.1 | nusA | TREPR_2532 | TREPR_1755 | Conserved domain protein. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.909 |
| AEF85288.1 | nusG | TREPR_2532 | TREPR_0925 | Conserved domain protein. | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. | 0.528 |
| AEF85288.1 | pyrG | TREPR_2532 | TREPR_3014 | Conserved domain protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.424 |
| AEF85288.1 | rho | TREPR_2532 | TREPR_2580 | Conserved domain protein. | Transcription termination factor rho (ATP-dependenthelicase rho); Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.851 |
| AEF85288.1 | rpoA | TREPR_2532 | TREPR_1501 | Conserved domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.995 |
| AEF85288.1 | rpoB | TREPR_2532 | TREPR_0930 | Conserved domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.990 |
| AEF85288.1 | rpoC | TREPR_2532 | TREPR_0931 | Conserved domain protein. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.978 |
| cmk | AEF85288.1 | TREPR_2339 | TREPR_2532 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Conserved domain protein. | 0.798 |
| cmk | nusA | TREPR_2339 | TREPR_1755 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | 0.920 |
| cmk | nusG | TREPR_2339 | TREPR_0925 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. | 0.780 |
| cmk | pnp | TREPR_2339 | TREPR_1761 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.818 |
| cmk | pyrG | TREPR_2339 | TREPR_3014 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.660 |
| cmk | rho | TREPR_2339 | TREPR_2580 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Transcription termination factor rho (ATP-dependenthelicase rho); Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.930 |
| cmk | rpmE | TREPR_2339 | TREPR_2579 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | Ribosomal protein L31; Binds the 23S rRNA. | 0.865 |
| cmk | rpoA | TREPR_2339 | TREPR_1501 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.988 |
| cmk | rpoB | TREPR_2339 | TREPR_0930 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.964 |
| cmk | rpoC | TREPR_2339 | TREPR_0931 | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.980 |
| nusA | AEF85288.1 | TREPR_1755 | TREPR_2532 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | Conserved domain protein. | 0.909 |
| nusA | cmk | TREPR_1755 | TREPR_2339 | Transcription termination factor NusA; Participates in both transcription termination and antitermination. | Cytidylate kinase/ribosomal protein S1; Identified by match to protein family HMM PF00575; match to protein family HMM PF02224; match to protein family HMM TIGR00017; match to protein family HMM TIGR00717. | 0.920 |
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