STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85377.1Transcriptional regulator, BadM/Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738. (139 aa)    
Predicted Functional Partners:
AEF84598.1
IscU protein; Identified by match to protein family HMM PF01592; match to protein family HMM PF04324.
 
  
 0.714
iscS
Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
 
  
 0.651
AEF85229.1
Cysteine desulfurase; Identified by match to protein family HMM PF00266.
  
  
 0.604
AEF86359.1
Conserved hypothetical protein.
       0.588
AEF84206.1
DNA polymerase domain protein; Identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758.
       0.453
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.450
nrdR
Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
     
 0.415
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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