STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF84385.1Chemotaxis protein MotB; Identified by match to protein family HMM PF00691. (243 aa)    
Predicted Functional Partners:
AEF84615.1
Chemotaxis protein PomA; Identified by match to protein family HMM PF01618.
 
 0.999
AEF84769.1
Flagellar motor switch protein FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.981
AEF86836.1
Chemotaxis protein CheW; Identified by match to protein family HMM PF01584; match to protein family HMM PF01739.
 
  
 0.973
flgK
Flagellar hook-associated protein FlgK; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; Belongs to the flagella basal body rod proteins family.
 
  
 0.964
AEF86803.1
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
  
 0.962
flgC
Flagellar basal-body rod protein FlgC; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
 
  
 0.952
fliS
Flagellar protein FliS; Identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208.
 
  
 0.943
fliM_2
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
 
  
 0.940
AEF86198.1
Flagellar hook protein FlgE; Identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM PF07559; match to protein family HMM TIGR03506.
 
  
 0.940
fliF
Flagellar M-ring protein FliF; Identified by match to protein family HMM PF01514; match to protein family HMM PF08345; match to protein family HMM TIGR00206.
 
  
 0.929
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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