Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AEF86381.1D-xylose-binding protein. (372 aa)    
Predicted Functional Partners:
AEF85784.1
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.949
AEF83640.1
Two-component response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
     0.920
AEF84400.1
Putative histidine kinase internal region; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF06580.
 
     0.910
AEF83829.1
L-arabinose ABC transporter; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.879
AEF85191.1
Xylose import ATP-binding protein XylG; Identified by match to protein family HMM PF00005.
 
  
 0.831
AEF85392.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
AEF85733.1
ABC transporter.
 
    
0.742
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02630; Belongs to the xylose isomerase family.
 
  
 0.551
AEF83624.1
Putative extracellular solute-binding protein, family 1; Identified by match to protein family HMM PF01547.
  
  
 0.537
AEF84862.1
Putative bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
  
  
 0.509
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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