STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF85758.1Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
AEF86732.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
    0.899
AEF85104.1
Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
   
0.868
AEF83849.1
Oligopeptide transport system permease protein AppB; Identified by match to protein family HMM PF00528.
  
    0.840
AEF86664.1
Dipeptide transport system permease protein DppC; Identified by match to protein family HMM PF00528.
    0.659
AEF83953.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
    0.635
AEF86349.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
    0.607
AEF86072.1
Oligopeptide transport system permease protein OppC; Identified by match to protein family HMM PF00528.
    0.600
AEF85859.1
Oligopeptide ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00496.
  
    0.581
AEF84652.1
Oligopeptide transport system permease protein AppC; Identified by match to protein family HMM PF00528.
    0.570
AEF86170.1
Glutathione transport system permease protein GsiD; Identified by match to protein family HMM PF00528.
    0.564
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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