STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedFSelenium metabolism protein YedF; Identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527; Belongs to the sulfur carrier protein TusA family. (207 aa)    
Predicted Functional Partners:
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.946
AEF86068.1
Identified by match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM TIGR01977.
 
 
 
 0.932
AEF85261.1
2-hydroxyglutaryl-CoA dehydratase, D-component; Identified by match to protein family HMM PF06050.
 
    0.843
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.780
selB
Selenocysteine-specific translation elongation factor; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475.
 
   
 0.777
iscS
Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
   
 
 0.744
AEF85229.1
Cysteine desulfurase; Identified by match to protein family HMM PF00266.
   
 
 0.744
AEF83993.1
Conserved hypothetical protein.
     
 0.734
AEF86027.1
Identified by match to protein family HMM PF02597.
  
 
 0.728
AEF86517.1
(R)-2-hydroxyglutaryl-CoA dehydratase activator; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.
 
     0.531
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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