Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83714.1 | AEF83882.1 | TREPR_3151 | TREPR_3149 | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | PIN domain protein; Identified by match to protein family HMM PF01850. | 0.658 |
| AEF83714.1 | AEF84076.1 | TREPR_3151 | TREPR_3148 | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | Conserved hypothetical protein. | 0.658 |
| AEF83714.1 | AEF85600.1 | TREPR_3151 | TREPR_3147 | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.447 |
| AEF83714.1 | AEF85935.1 | TREPR_3151 | TREPR_3150 | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | Hypothetical protein; Identified by glimmer; putative. | 0.658 |
| AEF83882.1 | AEF83714.1 | TREPR_3149 | TREPR_3151 | PIN domain protein; Identified by match to protein family HMM PF01850. | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.658 |
| AEF83882.1 | AEF84076.1 | TREPR_3149 | TREPR_3148 | PIN domain protein; Identified by match to protein family HMM PF01850. | Conserved hypothetical protein. | 0.946 |
| AEF83882.1 | AEF85600.1 | TREPR_3149 | TREPR_3147 | PIN domain protein; Identified by match to protein family HMM PF01850. | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.478 |
| AEF83882.1 | AEF85935.1 | TREPR_3149 | TREPR_3150 | PIN domain protein; Identified by match to protein family HMM PF01850. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF84076.1 | AEF83714.1 | TREPR_3148 | TREPR_3151 | Conserved hypothetical protein. | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.658 |
| AEF84076.1 | AEF83882.1 | TREPR_3148 | TREPR_3149 | Conserved hypothetical protein. | PIN domain protein; Identified by match to protein family HMM PF01850. | 0.946 |
| AEF84076.1 | AEF84556.1 | TREPR_3148 | TREPR_3427 | Conserved hypothetical protein. | PIN domain protein; Identified by match to protein family HMM PF01850. | 0.717 |
| AEF84076.1 | AEF85600.1 | TREPR_3148 | TREPR_3147 | Conserved hypothetical protein. | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | 0.478 |
| AEF84076.1 | AEF85935.1 | TREPR_3148 | TREPR_3150 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF84076.1 | AEF86837.1 | TREPR_3148 | TREPR_0065 | Conserved hypothetical protein. | Hypothetical protein; Identified by glimmer; putative. | 0.507 |
| AEF84556.1 | AEF84076.1 | TREPR_3427 | TREPR_3148 | PIN domain protein; Identified by match to protein family HMM PF01850. | Conserved hypothetical protein. | 0.717 |
| AEF85600.1 | AEF83714.1 | TREPR_3147 | TREPR_3151 | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.447 |
| AEF85600.1 | AEF83882.1 | TREPR_3147 | TREPR_3149 | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | PIN domain protein; Identified by match to protein family HMM PF01850. | 0.478 |
| AEF85600.1 | AEF84076.1 | TREPR_3147 | TREPR_3148 | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | Conserved hypothetical protein. | 0.478 |
| AEF85600.1 | AEF85935.1 | TREPR_3147 | TREPR_3150 | Decarboxylase, pyridoxal-dependent family; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; Belongs to the Orn/Lys/Arg decarboxylase class-II family. | Hypothetical protein; Identified by glimmer; putative. | 0.478 |
| AEF85935.1 | AEF83714.1 | TREPR_3150 | TREPR_3151 | Hypothetical protein; Identified by glimmer; putative. | PAS/PAC sensor hybrid histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518. | 0.658 |
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