Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83955.1 | AEF84185.1 | TREPR_0749 | TREPR_1192 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | 0.907 |
| AEF83955.1 | AEF85145.1 | TREPR_0749 | TREPR_0889 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | Conserved hypothetical protein. | 0.562 |
| AEF83955.1 | AEF86777.1 | TREPR_0749 | TREPR_1617 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | Helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580. | 0.907 |
| AEF83955.1 | polA | TREPR_0749 | TREPR_3060 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.673 |
| AEF83955.1 | radA | TREPR_0749 | TREPR_3200 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.649 |
| AEF83955.1 | recA | TREPR_0749 | TREPR_2344 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | Protein RecA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.567 |
| AEF83955.1 | uvrC | TREPR_0749 | TREPR_1101 | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.584 |
| AEF84185.1 | AEF83955.1 | TREPR_1192 | TREPR_0749 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | DNA and RNA helicase; Identified by match to protein family HMM PF00580. | 0.907 |
| AEF84185.1 | AEF85145.1 | TREPR_1192 | TREPR_0889 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | Conserved hypothetical protein. | 0.516 |
| AEF84185.1 | AEF86777.1 | TREPR_1192 | TREPR_1617 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | Helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580. | 0.922 |
| AEF84185.1 | polA | TREPR_1192 | TREPR_3060 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.598 |
| AEF84185.1 | radA | TREPR_1192 | TREPR_3200 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.650 |
| AEF84185.1 | recA | TREPR_1192 | TREPR_2344 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | Protein RecA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.621 |
| AEF84185.1 | uvrC | TREPR_1192 | TREPR_1101 | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.712 |
| AEF84849.1 | AEF85145.1 | TREPR_2038 | TREPR_0889 | Putative UvrD/REP helicase. | Conserved hypothetical protein. | 0.615 |
| AEF84849.1 | polA | TREPR_2038 | TREPR_3060 | Putative UvrD/REP helicase. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.687 |
| AEF84849.1 | radA | TREPR_2038 | TREPR_3200 | Putative UvrD/REP helicase. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.600 |
| AEF84849.1 | recA | TREPR_2038 | TREPR_2344 | Putative UvrD/REP helicase. | Protein RecA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.581 |
| AEF84849.1 | recX | TREPR_2038 | TREPR_2983 | Putative UvrD/REP helicase. | Putative RecA regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.438 |
| AEF84849.1 | uvrC | TREPR_2038 | TREPR_1101 | Putative UvrD/REP helicase. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.564 |
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