Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83698.1 | AEF84823.1 | TREPR_3256 | TREPR_3257 | Smr domain protein; Identified by match to protein family HMM PF01713. | Hypothetical protein; Identified by glimmer; putative. | 0.741 |
| AEF83698.1 | rplV | TREPR_3256 | TREPR_1482 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.729 |
| AEF83698.1 | rplY | TREPR_3256 | TREPR_1206 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.737 |
| AEF83698.1 | rpmB | TREPR_3256 | TREPR_0850 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. | 0.694 |
| AEF83698.1 | rpsF | TREPR_3256 | TREPR_2685 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.734 |
| AEF83698.1 | rpsG | TREPR_3256 | TREPR_1472 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.708 |
| AEF83698.1 | rpsH | TREPR_3256 | TREPR_1491 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.731 |
| AEF83698.1 | rpsJ | TREPR_3256 | TREPR_1476 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.713 |
| AEF83698.1 | rpsL | TREPR_3256 | TREPR_1471 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.709 |
| AEF83698.1 | rpsT | TREPR_3256 | TREPR_1945 | Smr domain protein; Identified by match to protein family HMM PF01713. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.699 |
| AEF84823.1 | AEF83698.1 | TREPR_3257 | TREPR_3256 | Hypothetical protein; Identified by glimmer; putative. | Smr domain protein; Identified by match to protein family HMM PF01713. | 0.741 |
| rplV | AEF83698.1 | TREPR_1482 | TREPR_3256 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Smr domain protein; Identified by match to protein family HMM PF01713. | 0.729 |
| rplV | rplY | TREPR_1482 | TREPR_1206 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.980 |
| rplV | rpmB | TREPR_1482 | TREPR_0850 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. | 0.981 |
| rplV | rpsF | TREPR_1482 | TREPR_2685 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.990 |
| rplV | rpsG | TREPR_1482 | TREPR_1472 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.992 |
| rplV | rpsH | TREPR_1482 | TREPR_1491 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.995 |
| rplV | rpsJ | TREPR_1482 | TREPR_1476 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
| rplV | rpsL | TREPR_1482 | TREPR_1471 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.992 |
| rplV | rpsT | TREPR_1482 | TREPR_1945 | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.946 |
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