Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83539.1 | AEF86050.1 | TREPR_3290 | TREPR_3289 | Hypothetical protein; Identified by glimmer; putative. | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | 0.499 |
| AEF83673.1 | AEF86050.1 | TREPR_0903 | TREPR_3289 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | 0.526 |
| AEF83673.1 | dnaN | TREPR_0903 | TREPR_0275 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.889 |
| AEF83673.1 | polA | TREPR_0903 | TREPR_3060 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.563 |
| AEF85074.1 | AEF85319.1 | TREPR_2223 | TREPR_2684 | DNA polymerase III domain protein. | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | 0.724 |
| AEF85074.1 | AEF86050.1 | TREPR_2223 | TREPR_3289 | DNA polymerase III domain protein. | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | 0.727 |
| AEF85074.1 | dnaN | TREPR_2223 | TREPR_0275 | DNA polymerase III domain protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.986 |
| AEF85074.1 | dnaX | TREPR_2223 | TREPR_0447 | DNA polymerase III domain protein. | DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.918 |
| AEF85074.1 | holA | TREPR_2223 | TREPR_0682 | DNA polymerase III domain protein. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128. | 0.983 |
| AEF85074.1 | polA | TREPR_2223 | TREPR_3060 | DNA polymerase III domain protein. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.484 |
| AEF85319.1 | AEF85074.1 | TREPR_2684 | TREPR_2223 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA polymerase III domain protein. | 0.724 |
| AEF85319.1 | AEF86050.1 | TREPR_2684 | TREPR_3289 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | 0.530 |
| AEF85319.1 | dnaN | TREPR_2684 | TREPR_0275 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.656 |
| AEF85319.1 | dnaX | TREPR_2684 | TREPR_0447 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA polymerase III, gamma and tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.724 |
| AEF85319.1 | polA | TREPR_2684 | TREPR_3060 | Plasmid-derived single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein); Identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.592 |
| AEF85627.1 | AEF86050.1 | TREPR_2028 | TREPR_3289 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | 0.523 |
| AEF85627.1 | dnaN | TREPR_2028 | TREPR_0275 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.889 |
| AEF85627.1 | polA | TREPR_2028 | TREPR_3060 | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.563 |
| AEF86050.1 | AEF83539.1 | TREPR_3289 | TREPR_3290 | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | Hypothetical protein; Identified by glimmer; putative. | 0.499 |
| AEF86050.1 | AEF83673.1 | TREPR_3289 | TREPR_0903 | DNA polymerase III subunit alpha; Identified by match to protein family HMM PF01336. | DNA-directed DNA polymerase; Identified by match to protein family HMM PF00817. | 0.526 |
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