STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiQCobalt ABC transporter, permease protein CbiQ; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454. (272 aa)    
Predicted Functional Partners:
AEF85032.1
Cobalamin; Identified by match to protein family HMM PF01891.
 
 0.998
AEF86585.1
Cobalt import ATP-binding protein CbiO 2; Identified by match to protein family HMM PF00005.
 
 0.998
AEF84967.1
Cobalt import ATP-binding protein CbiO 2; Identified by match to protein family HMM PF00005.
 
 
 0.902
AEF84324.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07155.
  
 
 0.750
AEF85665.1
Glutathione import ATP-binding protein GsiA; Identified by match to protein family HMM PF00005; match to protein family HMM PF00528.
  
 
 0.644
AEF85132.1
Putative ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.644
truA
tRNA pseudouridine synthase A (tRNA-uridine isomeraseI) (tRNA pseudouridylate synthase I) (PSU-I); Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.606
AEF86059.1
Precorrin-6y C5,15-methyltransferase (decarboxylating); Identified by match to protein family HMM PF00590; match to protein family HMM PF03602; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
  
  
 0.516
AEF86230.1
Identified by match to protein family HMM PF01061.
 
  
  0.499
AEF85495.1
CbiG; Identified by match to protein family HMM PF01890.
  
  
 0.484
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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