Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEF83936.1 | AEF84936.1 | TREPR_3352 | TREPR_3353 | Putative lipoprotein. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
AEF83936.1 | AEF85687.1 | TREPR_3352 | TREPR_3351 | Putative lipoprotein. | Conserved domain protein; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. | 0.470 |
AEF83936.1 | AEF85782.1 | TREPR_3352 | TREPR_3354 | Putative lipoprotein. | Identified by match to protein family HMM PF01381. | 0.518 |
AEF84936.1 | AEF83936.1 | TREPR_3353 | TREPR_3352 | Hypothetical protein; Identified by glimmer; putative. | Putative lipoprotein. | 0.773 |
AEF84936.1 | AEF85687.1 | TREPR_3353 | TREPR_3351 | Hypothetical protein; Identified by glimmer; putative. | Conserved domain protein; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. | 0.470 |
AEF84936.1 | AEF85782.1 | TREPR_3353 | TREPR_3354 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF01381. | 0.518 |
AEF85687.1 | AEF83936.1 | TREPR_3351 | TREPR_3352 | Conserved domain protein; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. | Putative lipoprotein. | 0.470 |
AEF85687.1 | AEF84936.1 | TREPR_3351 | TREPR_3353 | Conserved domain protein; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. | Hypothetical protein; Identified by glimmer; putative. | 0.470 |
AEF85782.1 | AEF83936.1 | TREPR_3354 | TREPR_3352 | Identified by match to protein family HMM PF01381. | Putative lipoprotein. | 0.518 |
AEF85782.1 | AEF84936.1 | TREPR_3354 | TREPR_3353 | Identified by match to protein family HMM PF01381. | Hypothetical protein; Identified by glimmer; putative. | 0.518 |