Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEF83769.1Biopolymer transport protein; Identified by match to protein family HMM PF01618. (214 aa)    
Predicted Functional Partners:
AEF85277.1
Putative biopolymer transport ExbD protein; Identified by match to protein family HMM PF02472.
 
 
 0.991
AEF86796.1
TolR protein.
 
 
 0.989
AEF84554.1
TonB protein; Identified by match to protein family HMM TIGR01352.
 
 
 0.980
AEF84922.1
TonB family C- domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.895
AEF83799.1
Putative TonB-dependent receptor; Identified by match to protein family HMM TIGR01352.
  
 
 0.872
AEF87033.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   
 0.786
AEF85743.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
AEF85230.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
AEF84757.1
Putative outer membrane protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.719
yaeT
Outer membrane protein assembly complex, YaeT protein; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479; match to protein family HMM TIGR03303.
  
   
 0.703
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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