STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF83885.1Hypothetical protein; Identified by glimmer; putative. (157 aa)    
Predicted Functional Partners:
rpoE
RNA polymerase sigma-E factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
       0.773
AEF85451.1
Conserved hypothetical protein.
       0.773
AEF84370.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Identified by match to protein family HMM PF01558.
       0.741
AEF85594.1
2-oxoglutarate oxidoreductase, beta subunit; Identified by match to protein family HMM PF02775.
       0.741
vorB
2-oxoglutarate oxidoreductase, alpha subunit; Identified by match to protein family HMM PF01855; match to protein family HMM PF02780.
       0.741
AEF84656.1
Conserved domain protein; Identified by match to protein family HMM PF00037.
       0.741
AEF85985.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.541
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.