Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEF87040.1Putative cell wall/surface repeat protein. (544 aa)    
Predicted Functional Partners:
AEF84537.1
Hypothetical protein; Identified by glimmer; putative.
       0.714
AEF83528.1
Hypothetical protein; Identified by glimmer; putative.
       0.580
AEF84865.1
Transcriptional regulator; Identified by match to protein family HMM PF01381.
 
     0.531
AEF84170.1
Repeat protein; Identified by match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
 
 0.470
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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