STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hndB1NADH dehydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01512. (624 aa)    
Predicted Functional Partners:
AEF85970.1
NADH dehydrogenase subunit E; Identified by match to protein family HMM PF01257.
 0.999
AEF84133.1
Fe-hydrogenase gamma subunit; Identified by match to protein family HMM PF01257.
 0.997
hndC3
Fe-hydrogenase gamma subunit; Identified by match to protein family HMM PF01257.
 0.997
hndA1
Iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI); Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
 
 
 0.997
hndA2
Hydrogenase-1; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
 
 
 0.991
hndA3
Hydrogen dehydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02906.
 
 
 0.991
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.978
AEF85293.1
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.970
fdhA
Formate dehydrogenase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.968
hydA1
Iron hydrogenase 1 ([Fe] hydrogenase) (Fe-onlyhydrogenase) (CpI); Identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
 
 
 
 0.907
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.