STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF83906.1Ferric uptake regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family. (142 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.750
AEF85288.1
Conserved domain protein.
  
 
 0.709
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.706
AEF86226.1
Rubredoxin/rubrerythrin; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
  
  
 0.703
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.701
AEF84933.1
Manganese-dependent transcription regulator; Identified by match to protein family HMM PF01022; match to protein family HMM PF01325; match to protein family HMM PF02742.
  
  
 0.687
AEF85208.1
Zinc import ATP-binding protein ZnuC; Identified by match to protein family HMM PF00005.
  
  
 0.659
gltB
Glutamate synthase, large subunit; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.605
AEF83762.1
Rubrerythrin; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915.
 
  
 0.581
AEF84105.1
ABC-type transport system, permease component; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032.
  
  
 0.580
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.