Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cysKCysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139. (306 aa)    
Predicted Functional Partners:
AEF85146.1
Serine acetyltransferase, plasmid (SAT); Identified by match to protein family HMM PF00132.
 
 0.986
AEF86726.1
Serine acetyltransferase, plasmid; Identified by match to protein family HMM PF00132.
 
 0.985
AEF84440.1
Cystathionine gamma-lyase; Identified by match to protein family HMM PF01053.
  
 0.959
AEF85447.1
Cystathionine gamma-lyase; Identified by match to protein family HMM PF01053.
  
 0.959
AEF83836.1
Cystathionine gamma-synthase; Identified by match to protein family HMM PF01053.
  
 0.959
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
  
 
 0.914
asrB
Sulfite reductase, subunit B; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
   
 
 0.906
AEF83830.1
Aspartate aminotransferase; Identified by match to protein family HMM PF00155.
   
 
 0.904
AEF86601.1
Nitrite/sulfite reductase, 4Fe-4S iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
  0.902
asrC
Sulfite reductase, subunit C; Identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
  0.902
Your Current Organism:
Treponema primitia ZAS2
NCBI taxonomy Id: 545694
Other names: T. primitia ZAS-2, Treponema primitia ZAS-2, Treponema primitia str. ZAS-2, Treponema primitia strain ZAS-2, Treponema sp. ZAS-2
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