Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF83634.1 | AEF84353.1 | TREPR_2220 | TREPR_3755 | Probable NADPH:quinone oxidoreductase 2; Identified by match to protein family HMM PF03358. | Putative YwbO; Identified by match to protein family HMM PF01323. | 0.598 |
| AEF83687.1 | AEF83874.1 | TREPR_3757 | TREPR_3759 | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | Conserved hypothetical protein. | 0.800 |
| AEF83687.1 | AEF84353.1 | TREPR_3757 | TREPR_3755 | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | Putative YwbO; Identified by match to protein family HMM PF01323. | 0.681 |
| AEF83687.1 | AEF84655.1 | TREPR_3757 | TREPR_3758 | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | 0.821 |
| AEF83687.1 | psuG | TREPR_3757 | TREPR_3756 | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.998 |
| AEF83874.1 | AEF83687.1 | TREPR_3759 | TREPR_3757 | Conserved hypothetical protein. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.800 |
| AEF83874.1 | AEF84353.1 | TREPR_3759 | TREPR_3755 | Conserved hypothetical protein. | Putative YwbO; Identified by match to protein family HMM PF01323. | 0.589 |
| AEF83874.1 | AEF84655.1 | TREPR_3759 | TREPR_3758 | Conserved hypothetical protein. | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | 0.929 |
| AEF83874.1 | psuG | TREPR_3759 | TREPR_3756 | Conserved hypothetical protein. | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.760 |
| AEF84353.1 | AEF83634.1 | TREPR_3755 | TREPR_2220 | Putative YwbO; Identified by match to protein family HMM PF01323. | Probable NADPH:quinone oxidoreductase 2; Identified by match to protein family HMM PF03358. | 0.598 |
| AEF84353.1 | AEF83687.1 | TREPR_3755 | TREPR_3757 | Putative YwbO; Identified by match to protein family HMM PF01323. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.681 |
| AEF84353.1 | AEF83874.1 | TREPR_3755 | TREPR_3759 | Putative YwbO; Identified by match to protein family HMM PF01323. | Conserved hypothetical protein. | 0.589 |
| AEF84353.1 | AEF84655.1 | TREPR_3755 | TREPR_3758 | Putative YwbO; Identified by match to protein family HMM PF01323. | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | 0.680 |
| AEF84353.1 | psuG | TREPR_3755 | TREPR_3756 | Putative YwbO; Identified by match to protein family HMM PF01323. | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.689 |
| AEF84655.1 | AEF83687.1 | TREPR_3758 | TREPR_3757 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.821 |
| AEF84655.1 | AEF83874.1 | TREPR_3758 | TREPR_3759 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Conserved hypothetical protein. | 0.929 |
| AEF84655.1 | AEF84353.1 | TREPR_3758 | TREPR_3755 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Putative YwbO; Identified by match to protein family HMM PF01323. | 0.680 |
| AEF84655.1 | psuG | TREPR_3758 | TREPR_3756 | Radical SAM; Identified by match to protein family HMM PF00037; match to protein family HMM PF04055. | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | 0.762 |
| psuG | AEF83687.1 | TREPR_3756 | TREPR_3757 | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | Kinase, PfkB family; Identified by match to protein family HMM PF00294. | 0.998 |
| psuG | AEF83874.1 | TREPR_3756 | TREPR_3759 | Indigoidine synthase A family protein; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. | Conserved hypothetical protein. | 0.760 |
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