STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69625.1Resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 8.87. (198 aa)    
Predicted Functional Partners:
EEF69626.1
Oxidoreductase, aldo/keto reductase family protein; KEGG: mma:MM3156 4.9e-75 oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
  
    0.669
EEF65974.1
Antioxidant, AhpC/TSA family; KEGG: oih:OB1677 3.3e-30 ccdA; holocytochrome c synthase K06196; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.668
EEF68015.1
Peptidase, M50 family; KEGG: bha:BH3015 3.5e-19 spoIVFB; protease (processing of pro-sigma-K to active sigma-K) K06402; Psort location: CytoplasmicMembrane, score: 9.99.
    
   0.536
EEF66553.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
    
   0.511
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
   
    0.408
EEF69627.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.401
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.