STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69542.1Hypothetical protein. (72 aa)    
Predicted Functional Partners:
EEF69543.1
Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.
       0.752
EEF69541.1
Hypothetical protein; KEGG: chu:CHU_3495 7.8e-07 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.87.
       0.705
EEF69540.1
Helicase C-terminal domain protein; KEGG: efa:EF3113 1.3e-10 recG; ATP-dependent DNA helicase RecG K03655; Psort location: Cytoplasmic, score: 8.87.
       0.557
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.528
EEF69538.1
Hypothetical protein.
       0.400
EEF69539.1
Glycosyl hydrolase family 35; KEGG: bcz:pE33L466_0350 9.4e-168 bgaC; beta-galactosidase K01190; Psort location: Cytoplasmic, score: 8.87.
       0.400
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.