STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69523.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (41 aa)    
Predicted Functional Partners:
EEF69524.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.648
EEF69525.1
Alpha amylase, catalytic domain protein; KEGG: gka:GK0615 2.0e-126 exo-alpha-1,4-glucosidase K01187; Psort location: Cytoplasmic, score: 9.98.
       0.465
EEF69526.1
ABC transporter, ATP-binding protein; KEGG: cvi:CV3653 9.1e-67 ugpC; sn-glycerol-3-phosphate transport, ATP-binding protein K05816; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the ABC transporter superfamily.
       0.465
EEF69522.1
DNA-binding helix-turn-helix protein; KEGG: bxe:Bxe_C0924 7.1e-05 transcriptional regulator, XRE family with shikimate kinase activity K00891; Psort location: Cytoplasmic, score: 8.87.
       0.414
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.