STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69298.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (41 aa)    
Predicted Functional Partners:
EEF69295.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: syn:slr2104 3.6e-75 hik22; two-component hybrid histidine kinase K02486; Psort location: CytoplasmicMembrane, score: 9.49.
       0.773
EEF69296.1
Hpt domain protein; KEGG: abo:ABO_1811 2.1e-05 two-component hybrid sensor and regulator; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEF69297.1
PAS domain S-box protein; KEGG: mag:amb1110 1.1e-64 signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
       0.773
EEF69304.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 6.6e-46 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 8.87.
       0.456
EEF69305.1
PAS domain S-box protein; KEGG: ret:RHE_PF00222 5.0e-08 probable two-component sensor histidine kinase protein; Psort location: Cytoplasmic, score: 8.87.
       0.456
EEF69299.1
Response regulator receiver domain protein; KEGG: ava:Ava_1878 3.1e-34 two component transcriptional regulator, winged helix family K07659; Psort location: Cytoplasmic, score: 9.98.
       0.418
EEF69300.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: cpf:CPF_0116 2.6e-76 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.49.
       0.418
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.