STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69271.1Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 1.2e-08 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00. (291 aa)    
Predicted Functional Partners:
EEF69269.1
KEGG: cac:CAC0703 1.5e-130 sugar ABC-transporter, ATP-ase component K02056; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.995
EEF69268.1
Basic membrane protein.
 
 
 0.994
EEF66153.1
ABC transporter, ATP-binding protein; KEGG: cpe:CPE1579 1.8e-180 probable ABC transporter K02056; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.986
EEF69270.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 3.7e-08 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
0.981
EEF66144.1
Basic membrane protein.
 
 
 0.979
EEF66154.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_3090 2.3e-08 ribose transport system permease protein RbsC; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.969
EEF66155.1
KEGG: aha:AHA_1905 4.5e-05 L-arabinose ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.895
EEF65922.1
ABC transporter, ATP-binding protein; KEGG: ctc:CTC00861 2.9e-173 mglA; galactoside transport ATP-binding protein mglA K02056; Psort location: CytoplasmicMembrane, score: 9.49.
  
  0.815
EEF69272.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
mgtE
Magnesium transporter; Acts as a magnesium transporter.
   
   0.457
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.