STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69254.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (91 aa)    
Predicted Functional Partners:
EEF69265.1
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 9.99.
     0.983
gap
KEGG: fth:FTH_1121 1.8e-125 gapA; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.98.
  
  
 0.693
EEF69264.1
Transcriptional regulator, MarR family.
 
  
 0.689
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
     
 0.621
EEF65656.1
Transcriptional regulator, MarR family; KEGG: son:SO0916 0.00014 putative acetyltransferase K03828; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.539
EEF69255.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.527
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.