STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mblMbl protein; KEGG: hpa:HPAG1_1318 1.4e-86 rod shape-determining protein K01529; Psort location: Cytoplasmic, score: 9.98. (329 aa)    
Predicted Functional Partners:
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.986
EEF66132.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.956
EEF66543.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.945
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.931
EEF66754.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: bcz:BCZK2802 5.1e-96 pbp2; penicillin-binding protein 2 K05364; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.915
minD
KEGG: pen:PSEEN1445 6.0e-47 minD; septum site-determining protein MinD; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.875
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.874
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
 
 0.852
EEF68115.1
KEGG: tte:TTE1916 9.5e-104 ftsI4; Cell division protein FtsI/penicillin-binding protein 2 K03587; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.834
EEF68535.1
Cell cycle protein, FtsW/RodA/SpoVE family; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
 
 0.830
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.