STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF69000.1Sigma-54 interaction domain protein; KEGG: eci:UTI89_C1573 7.8e-16 pspF; psp operon transcriptional activator K03974; Psort location: Cytoplasmic, score: 8.87. (949 aa)    
Predicted Functional Partners:
EEF69001.1
Putative RNA polymerase sigma-54 factor; KEGG: reh:H16_A0387 1.4e-17 rpoN; DNA-directed RNA polymerase sigma subunit (RpoN) K00960; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.977
rpoN
RNA polymerase sigma-54 factor; KEGG: reh:H16_A0387 3.4e-35 rpoN; DNA-directed RNA polymerase sigma subunit (RpoN) K00960; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.950
EEF69027.1
KEGG: smu:SMU.103 1.2e-11 putative PTS system, IIA component K02793; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.771
EEF67581.1
PTS system fructose IIA component; KEGG: tte:TTE0192 6.6e-09 manX; Phosphotransferase system, mannose/fructose-specific component IIA K02793; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.758
EEF69195.1
PTS system fructose IIA component; KEGG: ljo:LJ0742 4.4e-19 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific K02793.
 
  
 0.734
EEF66015.1
KEGG: sak:SAK_1911 1.6e-14 PTS system, IIA component, mannose/fructose/sorbose family K02793.
 
  
 0.713
EEF69132.1
PTS system fructose IIA component; KEGG: ljo:LJ0742 8.2e-18 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific K02793.
 
  
 0.697
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.694
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.694
EEF69159.1
PTS system fructose IIA component; KEGG: ljo:LJ0742 6.0e-15 phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA, probable mannose specific K02793; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.694
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.