Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEF68907.1 | EEF68909.1 | HOLDEFILI_00875 | HOLDEFILI_00877 | Sodium:neurotransmitter symporter family protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. | Hypothetical protein. | 0.444 |
EEF68908.1 | EEF68909.1 | HOLDEFILI_00876 | HOLDEFILI_00877 | KEGG: cpf:CPF_1229 3.6e-33 histidinol phosphate phosphatase family protein K04486; Psort location: Cytoplasmic, score: 8.87; Belongs to the PHP hydrolase family. HisK subfamily. | Hypothetical protein. | 0.572 |
EEF68909.1 | EEF68907.1 | HOLDEFILI_00877 | HOLDEFILI_00875 | Hypothetical protein. | Sodium:neurotransmitter symporter family protein; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. | 0.444 |
EEF68909.1 | EEF68908.1 | HOLDEFILI_00877 | HOLDEFILI_00876 | Hypothetical protein. | KEGG: cpf:CPF_1229 3.6e-33 histidinol phosphate phosphatase family protein K04486; Psort location: Cytoplasmic, score: 8.87; Belongs to the PHP hydrolase family. HisK subfamily. | 0.572 |