STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68787.1Aminotransferase, class I/II; KEGG: yps:YPTB3432 8.1e-114 putative aminotransferase K00812; Psort location: Cytoplasmic, score: 8.87. (403 aa)    
Predicted Functional Partners:
nifJ
KEGG: fnu:FN1170 0. pyruvate-flavodoxin oxidoreductase K03737.
  
 
 0.966
pdxB
KEGG: hma:rrnAC0362 1.3e-35 serA4; phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.98.
 
 0.914
pdxB-2
4-phosphoerythronate dehydrogenase; KEGG: tbd:Tbd_0950 1.6e-101 D-isomer specific 2-hydroxyacid dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.98.
  
 0.908
EEF68789.1
YheO-like protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.904
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
 
 0.887
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
  
  0.886
EEF66287.1
KEGG: ldb:Ldb1350 5.3e-55 homoserine dehydrogenase K00003; Psort location: Cytoplasmic, score: 8.87.
  
 0.875
EEF68426.1
KEGG: ttj:TTHA1104 1.1e-47 prephenate dehydratase K04518; Psort location: Cytoplasmic, score: 9.98.
 
 0.871
EEF66041.1
FAD dependent oxidoreductase; KEGG: ctc:CTC00417 6.9e-22 oxidoreductase K00100; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.870
EEF66042.1
Rieske [2Fe-2S] domain protein; KEGG: bce:BC0399 1.4e-23 oxidoreductase.
  
 
 0.870
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.