STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68417.1RmuC domain protein; KEGG: dme:Dmel_CG14217 0.00052 Tao-1 K04429. (494 aa)    
Predicted Functional Partners:
pcrA
KEGG: chy:CHY_1099 1.6e-133 pcrA; ATP-dependent DNA helicase PcrA K03657; Psort location: Cytoplasmic, score: 8.87.
    
 0.728
EEF68416.1
Hypothetical protein.
       0.564
mutL
DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
  
 0.523
EEF69176.1
HTH domain protein; KEGG: spz:M5005_Spy_1083 0.0015 PTS system, mannitol (cryptic)-specific IIA component K03491; Psort location: Cytoplasmic, score: 8.87.
   
    0.444
EEF69186.1
HTH domain protein; KEGG: sph:MGAS10270_Spy1139 2.1e-05 transcription antiterminator, BglG family / PTS system, mannitol (cryptic)-specific IIA component K00890; Psort location: Cytoplasmic, score: 8.87.
   
    0.444
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.