STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF68216.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (291 aa)    
Predicted Functional Partners:
EEF67912.1
KEGG: bcl:ABC0885 3.3e-14 PTS system, mannitol/fructose-specific enzyme II, B component K02799; Psort location: Cytoplasmic, score: 8.87.
 
     0.564
EEF68217.1
Hypothetical protein.
       0.533
EEF68218.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.533
EEF68219.1
Ankyrin repeat protein; KEGG: dre:406351 1.2e-24 zgc:55705 K08848; Psort location: Cytoplasmic, score: 8.87.
       0.496
EEF67913.1
Putative sugar-specific permease, SgaT/UlaA; KEGG: mmy:MSC_0395 2.7e-51 conserved hypothetical transmembrane protein K02822:K03475; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.495
EEF68220.1
KEGG: tte:TTE2333 2.0e-181 fusA2; translation elongation and release factors (GTPases) K02355; Psort location: Cytoplasmic, score: 9.98.
       0.483
EEF68861.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.446
EEF69809.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.421
Your Current Organism:
Holdemania filiformis
NCBI taxonomy Id: 545696
Other names: H. filiformis DSM 12042, Holdemania filiformis DSM 12042, Holdemania filiformis str. DSM 12042, Holdemania filiformis strain DSM 12042
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.